Transactions on Computational Systems Biology XI

Computational Models for Cell Processes Corrado Priami. Corrado Priami Ralph-
Johan Back Ion Petre (Eds.) Transactions on Computational Systems Biology XI
13 Series Editors Sorin Istrail, Brown University, Providence, RI, USA Pavel.

Author: Corrado Priami

Publisher: Springer Science & Business Media

ISBN: 364204185X

Category: Computers

Page: 335

View: 334

This issue on Computational Models for Cell Processes is based on a workshop that took place in Turku, Finland, May 2008. The papers span a mix of approaches to systems biology, ranging from quantitative techniques to computing paradigms inspired by biology.

Transactions on Computational Systems Biology XIII

Springer, Heidelberg (2006) 5. Calder, M., Hillston, J.: Process algebra modelling
styles for biomolecular processes. In: Priami, C., Back, R.-J., Petre, I. (eds.)
Transactions on Computational Systems Biology XI. LNCS (LNBI), vol. 5750, pp.

Author: Ralph-Johan Back

Publisher: Springer

ISBN: 3642197485

Category: Computers

Page: 193

View: 495

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This, the 13th Transactions on Computational Systems Biology volume, guest edited by Ralph-Johan Back, Ion Petre, and Erik de Vink, focuses on Computational Models for Cell Processes and features a number of carefully selected and enhanced contributions initially presented at the CompMod workshop, which took place in Eindhoven, The Netherlands, in November 2009. From different points of view and following various approaches, the papers cover a wide range of topics in systems biology, addressing the dynamics and the computational principles of this emerging field.

Transactions on Computational Systems Biology VII

A state of the system is an x = (x1 ,...,x n) ∈ {0,1}n, where xi is the (discretised)
expression level of gene i: xi = 1 when gene i is expressed, 0 otherwise. For β ∈
{0,1}, we define β by 0 = 1 and 1 = 0. For x ∈ {0,1}n and I ⊆ {1,...,n}, xI ∈ {0,1}n is
 ...

Author: Anna Ingolfsdottir

Publisher: Springer

ISBN: 3540488391

Category: Computers

Page: 187

View: 317

This volume, the 7th in the Transactions on Computational Systems Biology series, contains a fully refereed and carefully selected set of papers from two workshops: BioConcur 2004 held in London, UK in August 2004 and BioConcur 2005 held in San Francisco, CA, USA in August 2005. The 8 papers chosen for this special issue are devoted to various aspects of computational methods, algorithms, and techniques in bioinformatics.

Transactions on Computational Systems Biology II

2.1 Support Vector Machines Suppose that a set of m training points xi (1 ≤ i ≤
m) in an n-dimensional space is given. Each point x i is labeled by yi ∈ {1,−1}
denoting the membership of the point. An SVM is a learning method for binary ...

Author: Alexander Zelikovsky

Publisher: Springer

ISBN: 3540316612

Category: Computers

Page: 156

View: 926

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This second volume of the Transactions on Computational Systems Biology is devoted to considerably extended versions of selected papers presented at the International Workshop on Bioinformatics Research and Applications (IWBRA 2005), part of the International Conference on Computational Science (ICCS 2005), which took place at Emory University, Atlanta, Georgia, USA, in May 2005. The ten papers selected for the special issue cover a wide range of bioinformatics research such as problems in RNA structure prediction, coding schemes and structural alphabets for protein structure prediction, novel techniques for efficient gene transfer in phylogenetic networks, practical algorithms minimizing recombinations in pedigree phasing, parallel implementation in Open MP for finding the corresponding shortest edit distance between two signed gene permutations, and bioinformatics problems in DNA microarrays.

Transactions on Computational Systems Biology I

According to Equation 5 each mode evolves on a characteristic time - scale Ti ;
i.e. the real parts R ( ^ i ) of the eigenvalues of J determine the time - scale of the
processes taking place locally in the reaction system . The modes Xi may be ...

Author: Corrado Priami

Publisher:

ISBN:

Category: Computers

Page: 110

View: 308

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This first volume of the Transactions on Computational Systems Biology is made up of papers by members of the journal's Editorial Board to provide a representative and smart start-up to the new journal.

Mobility in Process Calculi and Natural Computing

References. 1. 10. 11. 12. 13. 14. 15. 16. 17. 18. 19. M. Abadi, A. Gordon. The Spi
-calculus. Computer and Communication Security, 36–47, 1997. ... Transactions
on Computational Systems Biology XI, LNBI vol.5750, 26–44, 2009. B. Aman, G.

Author: Bogdan Aman

Publisher: Springer Science & Business Media

ISBN: 3642248675

Category: Computers

Page: 210

View: 398

The design of formal calculi in which fundamental concepts underlying interactive systems can be described and studied has been a central theme of theoretical computer science in recent decades, while membrane computing, a rule-based formalism inspired by biological cells, is a more recent field that belongs to the general area of natural computing. This is the first book to establish a link between these two research directions while treating mobility as the central topic. In the first chapter the authors offer a formal description of mobility in process calculi, noting the entities that move: links (π-calculus), ambients (ambient calculi) and branes (brane calculi). In the second chapter they study mobility in the framework of natural computing. The authors define several systems of mobile membranes in which the movement inside a spatial structure is provided by rules inspired by endocytosis and exocytosis. They study their computational power in comparison with the classical notion of Turing computability and their efficiency in algorithmically solving hard problems in polynomial time. The final chapter deals with encodings, establishing links between process calculi and membrane computing so that researchers can share techniques between these fields. The book is suitable for computer scientists working in concurrency and in biologically inspired formalisms, and also for mathematically inclined scientists interested in formalizing moving agents and biological phenomena. The text is supported with examples and exercises, so it can also be used for courses on these topics.

Artificial Evolution

3946 : T.R. Roth - Berghofer , S. Schulz , D.B. Leake ( Eds . ) , Modeling and
Retrieval of Context . XI , 149 pages . 2006. ... 2006 . Vol . 3939 : C. Priami , L.
Cardelli , S. Emmott ( Eds . ) , Transactions on Computational Systems Biology IV
.

Author: El-ghazali Talbi

Publisher: Springer-Verlag New York Incorporated

ISBN:

Category: Computers

Page: 310

View: 357

This book is based on the best papers presented at the 7th Conference on Artificial Evolution, EA 2005, held in Lille (France).

Parallel Processing and Applied Mathematics

2006 . Vol . 3939 : C . Priami , L . Cardelli , S . Emmott ( Eds . ) , Transactions on
Computational Systems Biology IV . ... XI , 359 pages . 2006 . Vol . 3927 : J .
Hespanha , A . Tiwari ( Eds . ) , Hybrid Systems : Computation and Control . XII ,
584 ...

Author:

Publisher:

ISBN:

Category: Mathematics

Page:

View: 237


Advances in Computer Systems Architecture

XI , 411 pages . 2005 . Vol . 3699 : C . S . Calude , M . J . Dinneen , G . Păun , M .
J . Pérez - Jiménez , G . Rozenberg ( Eds . ) , Unconventional ... 3680 : C . Priami
, A . Zelikovsky ( Eds . ) , Transactions on Computational Systems Biology II .

Author:

Publisher:

ISBN:

Category: Computer architecture

Page:

View: 500


Peer to peer Systems

3719 : M . Hobbs , A . M . Goscinski , W . Zhou ( Eds . ) , Distributed and Parallel
Computing . XI , 448 pages . 2005 . Vol . 3718 : V ... 3680 : C . Priami , A .
Zelikovsky ( Eds . ) , Transactions on Computational Systems Biology II . IX , 153
pages .

Author:

Publisher:

ISBN:

Category: Peer-to-peer architecture (Computer networks)

Page:

View: 925


On the Move to Meaningful Internet Systems CoopIS DOA and ODBASE

3719 : M . Hobbs , A . M . Goscinski , W . Zhou ( Eds . ) , Distributed and Parallel
Computing . XI , 448 pages . 2005 . Vol . 3718 : V ... 3680 : C . Priami , A .
Zelikovsky ( Eds . ) , Transactions on Computational Systems Biology II . IX , 153
pages .

Author:

Publisher:

ISBN:

Category: Distributed databases

Page:

View: 456


Networking ICN

3380 : C . Priami , Transactions on Computational Systems Biology I . IX , 111
pages . 2005 . ( Subseries ... IX , 415 pages . 2005 . Vol . 3363 : T . Eiter , L .
Libkin ( Eds . ) , Database Theory - ICDT 2005 . XI , 413 pages . 2004 . Vol . 3362
: G ...

Author:

Publisher:

ISBN:

Category: Computer networks

Page:

View: 714


The British National Bibliography

Author: Arthur James Wells

Publisher:

ISBN:

Category: English literature

Page:

View: 672


Computational Science and Its Applications

2006 . Vol . 3939 : C . Priami , L . Cardelli , S . Emmott ( Eds . ) , Transactions on
Computational Systems Biology IV . ... XI , 359 pages . 2006 . Vol . 3927 : J .
Hespanha , A . Tiwari ( Eds . ) , Hybrid Systems : Computation and Control . XII ,
584 ...

Author:

Publisher:

ISBN:

Category: Computational complexity

Page:

View: 544


Digital Libraries

XI, 407 pages. 2005. Vol. 3770. J. Akoka, S.W. Liddle, I.-Y. Song, M. Bertolotto, I.
Comyn-Wattiau, W.-J. van den Heuvel, M. Kolp, ... 3737: C. Priami, E. Merelli, P.
Gonzalez, A. Omicini (Eds.), Transactions on Computational Systems Biology III.

Author:

Publisher:

ISBN:

Category: Digital libraries

Page:

View: 197


High Performance Computing for Computational Science VECPAR

Vol . 3403 : B . Ganter , R . Godin ( Eds . ) , Formal Concept Analysis . XI , 419
pages . 2005 . ( Subseries LNAI ) . Vol . 3402 : M . Daydé , J . J ... 3380 : C .
Priami ( Ed . ) , Transactions on Computational Systems Biology I . IX , 111 pages
. 2005 .

Author:

Publisher:

ISBN:

Category: High performance computing

Page:

View: 814


Genomics and Proteomics Engineering in Medicine and Biology

In 2003, he was also the founding chair of the International IEEE Conference on
Neural Engineering and the first chair of the steering committee of the IEEE
Transaction on Computational Biology and Bioinformatics sponsored by the IEEE
(CS, ...

Author: Metin Akay

Publisher: Wiley-IEEE Press

ISBN:

Category: Medical

Page: 297

View: 492

Current applications and recent advances in genomics and proteomics Genomics and Proteomics Engineering in Medicine and Biology presents a well-rounded, interdisciplinary discussion of a topic that is at the cutting edge of both molecular biology and bioengineering. Compiling contributions by established experts, this book highlights up-to-date applications of biomedical informatics, as well as advancements in genomics-proteomics areas. Structures and algorithms are used to analyze genomic data and develop computational solutions for pathological understanding. Topics discussed include: Qualitative knowledge models Interpreting micro-array data Gene regulation bioinformatics Methods to analyze micro-array Cancer behavior and radiation therapy Error-control codes and the genome Complex life science multi-database queries Computational protein analysis Tumor and tumor suppressor proteins interactions

Modelling in Molecular Biology

Describes how to find regularities among empirical data, as well as conceptual models and theories. This volume consists of papers concerned with models and methods used in solving some fundamental problems of biosciences.

Author: Gabriel Ciobanu

Publisher: Springer Science & Business Media

ISBN: 9783540407997

Category: Science

Page: 305

View: 418

Presents new mathematical and computational models as well as statistical methods for the solution of fundamental problems in the biosciences. Describes how to find regularities among empirical data, as well as conceptual models and theories.

RECOMB 2003

Author: Webb Miller

Publisher: Assn for Computing Machinery

ISBN: 9781581136357

Category: Technology & Engineering

Page: 341

View: 710

We study haplotype reconstruction under the Mendelian law of inheritance and the minimum recombination principleon pedigree data. We prove that the problem of finding a mini-mum-recombinant haplotype configuration (MRHC) is in general NP-hard. This is the first complexity result concerning the problem to our knowledge. An iterative algorithm based on blocks of consecutive resolved marker loci (called block-extension) is proposed. It is very efficient and can be used for large pedigrees with a large number of markers, especially for those data sets requiring few recombinants (or recombination events). A polynomial-time exact algorithm for haplotype reconstruction without recombinants is also presented. This algorithm first identifies all the necessary constraints based on the Mendelian law and the zero recombinant assumption, and represents them using a system of linear equations over the cyclic group Z2. By using a simple method based on Gaussian elimination, we could obtain all possible feasible haplotype configurations. We have tested the block-extension algorithm on simulated data generated on three pedigree structures. The results show that the algorithm performs very well on both multi-allelic and biallelic data, especially when the number of recombinants is small.

Advances in Banking Technology and Management Impacts of ICT and CRM

Financial Review, 11, 69-87. Kasabov, N. ... IEEE Transactions on Systems, Man
and Cybernetics-Part B, Cybernetics, 31(6), 902-918. Han, M., & Xi, J. ... Evolving
connectionist systems-methods and applications in bioinformatics. In Brain ...

Author: Ravi, Vadlamani

Publisher: IGI Global

ISBN: 1599046776

Category: Computers

Page: 380

View: 856

Banking across the world has undergone extensive changes thanks to the profound influence of developments and trends in information communication technologies, business intelligence, and risk management strategies. While banking has become easier and more convenient for the consumer, the advances and intricacies of emerging technologies have made banking operations all the more cumbersome. Advances in Banking Technology and Management: Impacts of ICT and CRM examines the various myriads of technical and organizational elements that impact services management, business management, risk management, and customer relationship management, and offers research to aid the successful implementation of associated supportive technologies.